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Department of Biology and BiochemistryUniversity of Houston  


- Non-interactive : all records sorted by base pair type | authors' names.

- Interactive : search the database.

- Summary table [Single page | Multiple pages].

- Structures of Base Pairs, Base Triples and Base Quadruples.

- "Database of non-canonical base pairs found in known RNA structures" [PDF format. Nucleic Acid Research, 2000 Jan 1; 28(1):375-376].




RNA World

Informatics

Phylogeny

Database


NON-CANONICAL BASE PAIR DATABASE : All Records Page Sorted by Base Pair Type


# Base Pair TypeAuthorsDetails
 
1  more info...

Normal Purine-Pyrimidine Base Pairs

2  AC reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
3  AC reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
4  AC reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
5  AC reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
6  AC reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
7  AC reverse HoogsteenBatey RT, Rambo RP, Lucast L, Rha B, Doudna JAmore info...
8  AC reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
9  AC reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
10  AC reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
11  AC reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
12  AC reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
13  AC reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
14  AC reverse HoogsteenDeng J, Xiong Y, Pan B, Sundaralingam Mmore info...
15  AC reverse HoogsteenFukai S, Nureki O, Sekine S, Shimada A, Tao J, Vassylyev DG, Yokoyama Smore info...
16  AC reverse HoogsteenHainzl T, Huang S, Sauer-Eriksson AEmore info...
17  AC reverse HoogsteenJovine L, Hainzl T, Oubridge C, Scott WG, Li J, Sixma TK, Wonacott A, Skarzynski T, Nagai Kmore info...
18  AC wobbleBatey RT, Gilbert SD, Montange RKmore info...
19  AC wobbleCai Z, Tinoco I Jrmore info...
20  AC wobbleDurant PC, Davis DRmore info...
21  AC wobbleFlinders JC, Dieckmann, Tmore info...
22  AC wobbleHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
23  AC wobbleHoogstraten C, Legault P, Pardi Amore info...
24  AC wobbleHuppler A, Nikstad LJ, Allmann AM, Brow DA, Butcher SEmore info...
25  AC wobbleJang SB, Hung LW, Chi YI, Holbrook EL, Carter RJ, Holbrook SRmore info...
26  AC wobbleJuneau, K, Podell, ER, Harrington, DJ, Cech, TRmore info...
27  AC wobbleJuneau, K, Podell, ER, Harrington, DJ, Cech, TRmore info...
28  AC wobbleLima S, Hildenbrand J, Korostelev A, Hattman S, Li Hmore info...
29  AC wobbleLima S, Hildenbrand J, Korostelev A, Hattman S, Li Hmore info...
30  AC wobbleMichiels PJ, Schouten CH, Hilbers CW, Heus HAmore info...
31  AC wobblePan B, Mitra SN, Sundaralingam Mmore info...
32  AC wobblePuglisi JD, Wyatt JR, Tinoco I Jrmore info...
33  AC wobbleSakamoto T, Morita S, Tabata K, Nakamura K, Kawai Gmore info...
34  AC wobbleSakamoto T, Morita S, Tabata K, Nakamura K, Kawai Gmore info...
35  AC wobbleSerganov A, Yuan YR, Pikovskaya O, Polonskaia A, Malinina L, Phan AT, Hobartner C, Micura R, Breaker RR, Patel DJmore info...
36  AC wobbleStuart JW, Gdaniec Z, Guenther R, Marszalek M, Sochacka E, Malkiewicz A, Agris PFmore info...
37  AC wobbleVogtherr M, Schubel H, Limmer Smore info...
38  AC wobbleWild K, Weichenrieder O, Leonard GA, Cusack Smore info...
39  AC wobbleZimmermann GR, Shields TP, Jenison RD, Wick CL, Pardi Amore info...
40  AT reverse HoogsteenLadner JE, Jack A, Robertus JD, Brown RS, Rhodes D, Clark BF, Klug A more info...
41  AT reverse HoogsteenNissen P, Thirup S, Kjeldgaard M, Nyborg Jmore info...
42  AT reverse HoogsteenQuigley GJ, Rich Amore info...
43  AT reverse HoogsteenSchmitt E, Panvert M, Blanquet S, Mechulam Ymore info...
44  AT reverse HoogsteenWesthof E, Dumas P, Moras Dmore info...
45  AU reverse HoogsteenAgalarov SC, Sridhar Prasad G, Funke PM, Stout CD, Williamson JRmore info...
46  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
47  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
48  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
49  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
50  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
51  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
52  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
53  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
54  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
55  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
56  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
57  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
58  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
59  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
60  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
61  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
62  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
63  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
64  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
65  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
66  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
67  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
68  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
69  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
70  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
71  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
72  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
73  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
74  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
75  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
76  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
77  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
78  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
79  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
80  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
81  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
82  AU reverse HoogsteenBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
83  AU reverse HoogsteenBiou V, Yaremchuk A, Tukalo M, Cusack Smore info...
84  AU reverse HoogsteenBullock TL, Sherlin LD, Perona JJmore info...
85  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
86  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
87  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
88  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
89  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
90  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
91  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
92  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
93  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
94  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
95  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
96  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
97  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
98  AU reverse HoogsteenCarter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan Vmore info...
99  AU reverse HoogsteenCate JH, Gooding AR, Podell E, Zhou K, Golden BL, Kundrot CE, Cech TR, Doudna JAmore info...
100  AU reverse HoogsteenCate JH, Gooding AR, Podell E, Zhou K, Golden BL, Szewczak AA, Kundrot CE, Cech TR, Doudna JAmore info...
101  AU reverse HoogsteenCorrell CC, Freeborn B, Moore PB, Steitz TAmore info...
102  AU reverse HoogsteenCorrell CC, Munishkin A, Chan YL, Ren Z, Wool IG, Steitz TAmore info...
103  AU reverse HoogsteenDallas A, Moore PBmore info...
104  AU reverse HoogsteenDallas A, Moore PBmore info...
105  AU reverse HoogsteenDelagoutte B, Moras D, Cavarelli Jmore info...
106  AU reverse HoogsteenEnnifar E, Nikulin A, Tishchenko S, Serganov A, Nevskaya N, Garber M, Ehresmann B, Ehresmann C, Nikonov S, Dumas Pmore info...
107  AU reverse HoogsteenFan P, Suri AK, Fiala R, Live D, Patel DJmore info...
108  AU reverse HoogsteenFukai S, Nureki O, Sekine S, Shimada A, Tao J, Vassylyev DG, Yokoyama Smore info...
109  AU reverse HoogsteenHainzl T, Huang S, Sauer-Eriksson AEmore info...
110  AU reverse HoogsteenHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
111  AU reverse HoogsteenHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
112  AU reverse HoogsteenHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
113  AU reverse HoogsteenHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
114  AU reverse HoogsteenHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
115  AU reverse HoogsteenHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
116  AU reverse HoogsteenHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
117  AU reverse HoogsteenHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
118  AU reverse HoogsteenHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
119  AU reverse HoogsteenHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
120  AU reverse HoogsteenHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
121  AU reverse HoogsteenHarms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath Amore info...
122  AU reverse HoogsteenJuneau, K, Podell, ER, Harrington, DJ, Cech, TRmore info...
123  AU reverse HoogsteenJuneau, K, Podell, ER, Harrington, DJ, Cech, TRmore info...
124  AU reverse HoogsteenKieft JS, Zhou K, Grech A, Jubin R, Doudna JAmore info...
125  AU reverse HoogsteenKobayashi T, Nureki O, Ishitani R, Yaremchuk A, Tukalo M, Cusack S, Sakamoto K, Yokoyama Smore info...
126  AU reverse HoogsteenKrasilnikov AS, Yang X, Pan T, Mondragon Amore info...
127  AU reverse HoogsteenNikulin A, Serganov A, Ennifar E, Tishchenko S, Nevskaya N, Shepard W, Portier C, Garber M, Ehresmann B, Ehresmann C, Nikonov S, Dumas Pmore info...
128  AU reverse HoogsteenQuigley GJ, Rich Amore info...
129  AU reverse HoogsteenRath VL, Silvian LF, Beijer B, Sproat BS, Steitz TAmore info...
130  AU reverse HoogsteenSankaranarayanan R, Dock-Bregeon AC, Romby P, Caillet J, Springer M, Rees B, Ehresmann C, Ehresmann B, Moras Dmore info...
131  AU reverse HoogsteenSeggerson K, Moore PBmore info...
132  AU reverse HoogsteenSerganov A, Keiper S, Malinina L, Tereshko V, Skripkin E, Hobartner C, Polonskaia A, Phan AT, Wombacher R, Micura R, Dauter Z, Jaschke A, Patel DJmore info...
133  AU reverse HoogsteenShi H, Moore PBmore info...
134  AU reverse HoogsteenShi H, Moore PBmore info...
135  AU reverse HoogsteenSilvian LF, Wang J, Steitz TAmore info...
136  AU reverse HoogsteenSzewczak AA, Moore PBmore info...
137  AU reverse HoogsteenWesthof E, Dumas P, Moras Dmore info...
138  AU reverse HoogsteenWimberly B, Varani G, Tinoco I Jrmore info...
139  AU reverse HoogsteenWohnert J, Dingley AJ, Stoldt M, Görlach M, Grzesiek S, Brown LRmore info...
140  AU reverse HoogsteenWohnert J, Dingley AJ, Stoldt M, Görlach M, Grzesiek S, Brown LRmore info...
141  AU reverse HoogsteenYang X, Gerczei T, Glover LT, Correll CCmore info...
142  AU reverse HoogsteenYaremchuk A, Tukalo M, Grotli M, Cusack Smore info...
143  AU reverse HoogsteenZhang L, Doudna JAmore info...
144  AU reverse HoogsteenZhang L, Doudna JAmore info...
145  CG Watson-Crick 2Juneau, K, Podell, ER, Harrington, DJ, Cech, TRmore info...
146  GC carbonyl-amino, imino-N3Ban N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
147  GC carbonyl-amino, imino-N3Ban N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
148  GC carbonyl-amino, imino-N3Juneau, K, Podell, ER, Harrington, DJ, Cech, TRmore info...
149  GC imino-N3; amino-carbonylBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
150  GC imino-N3; amino-carbonylBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
151  GC imino-N3; amino-carbonylFukai S, Nureki O, Sekine S, Shimada A, Tao J, Vassylyev DG, Yokoyama Smore info...
152  GU N3-imino; amino-4-carbonylBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
153  GU N3-imino; amino-4-carbonylKrasilnikov AS, Yang X, Pan T, Mondragon Amore info...
154  GU wobbleAddess KJ, Basilion JP, Klausner RD, Rouault TA, Pardi Amore info...
155  GU wobbleAddess KJ, Basilion JP, Klausner RD, Rouault TA, Pardi Amore info...
156  GU wobbleAllain FH, Varani Gmore info...
157  GU wobbleAllain FH, Varani Gmore info...
158  GU wobbleAnderson AC, O'Neil RH, Filman DJ, Frederick CAmore info...
159  GU wobbleBaeyens KJ, De Bondt HL, Holbrook SRmore info...
160  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
161  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
162  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
163  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
164  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
165  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
166  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
167  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
168  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
169  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
170  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
171  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
172  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
173  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
174  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
175  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TAmore info...
176  GU wobbleBan N, Nissen P, Hansen J, Moore PB, Steitz TA