Non-canonical Base Pair Database | Individual Record Page 12

Fox Lab

Department of Biology and Biochemistry | University of Houston

- Non-interactive : all records sorted by base pair type | authors' names.

- Summary table [Single page | Multiple pages].

- Structures of Base Pairs, Base Triples and Base Quadruples.

- "Database of non-canonical base pairs found in known RNA structures" [PDF format. Nucleic Acid Research, 2000 Jan 1; 28(1):375-376].

RNA World

Informatics

Phylogeny

Database

NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 12

Authors: Trikha J, Filman DJ, Hogle JM

Citation: Crystal structure of a 14 bp RNA duplex with non-symmetrical tandem GxU wobble base pairs. Nucleic Acids Research 27(7):1728-39 April 01, 1999  [PDB link]

Base Pair Type: GU wobble

Base Pair Category: Normal Purine-Pyrimidine Base Pairs; Cis Watson-Crick/Watson-Crick

Sequence Context: 5'  3'
C-G,Watson-Crick
G-U
G-U,Wobble
3'  5'

Structure: 14 base pair RNA duplex

Pucker Info: *

Melting Point: *

Free Energy: *

Chemical Shift: *

Glycosidic Conf: *

Extra Info: *

Figure: GU wobble