Non-canonical Base Pair Database | Individual Record Page 1423

Fox Lab

Department of Biology and Biochemistry | University of Houston

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- Summary table [Single page | Multiple pages].

- Structures of Base Pairs, Base Triples and Base Quadruples.

- "Database of non-canonical base pairs found in known RNA structures" [PDF format. Nucleic Acid Research, 2000 Jan 1; 28(1):375-376].

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NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 1423

Authors: Silvian LF, Wang J, Steitz TA

Citation: Insights into editing from an ile-tRNA synthetase structure with tRNAile and mupirocin Science 285(5430):1074-1077 August 13, 1999  [PDB link]

Base Pair Type: AU reverse Hoogsteen

Base Pair Category: Normal Purine-Pyrimidine Base Pairs; Trans Hoogsteen/Shallow groove

Sequence Context: 5'  3'
A U,*
A-U
G G,*
3'  5'

Structure: tRNA (Ile)

Pucker Info: All C3' endo

Melting Point: *

Free Energy: *

Chemical Shift: *

Glycosidic Conf: All anti

Extra Info: A58 and U54 form a mismatch

Figure: AU reverse Hoogsteen