Non-canonical Base Pair Database | Individual Record Page 1447

Fox Lab

Department of Biology and Biochemistry | University of Houston

- Non-interactive : all records sorted by base pair type | authors' names.

- Summary table [Single page | Multiple pages].

- Structures of Base Pairs, Base Triples and Base Quadruples.

- "Database of non-canonical base pairs found in known RNA structures" [PDF format. Nucleic Acid Research, 2000 Jan 1; 28(1):375-376].

RNA World

Informatics

Phylogeny

Database

NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 1447

Authors: Schmitt E, Panvert M, Blanquet S, Mechulam Y

Citation: Crystal structure of methionyl-tRNAfMet transformylase complexed with the initiator formyl-methionyl-tRNAfMet EMBO J 17(23):6819-6826 December 01, 1998  [PDB link]

Base Pair Type: AT reverse Hoogsteen

Base Pair Category: Normal Purine-Pyrimidine Base Pairs; Trans Watson-Crick/Hoogsteen

Sequence Context: 5'  3'
A PSU,*
A-T
A G,*
3'  5'

Structure: Methionyl-tRNAFMET formyltransferase

Pucker Info: A58-C2' endo,T54-C3' endo

Melting Point: *

Free Energy: *

Chemical Shift: *

Glycosidic Conf: All anti

Extra Info: A58.T54 form a mismatch

Figure: AT reverse Hoogsteen