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Department of Biology and BiochemistryUniversity of Houston  


- Non-interactive : all records sorted by base pair type | authors' names.

- Interactive : search the database.

- Summary table [Single page | Multiple pages].

- Structures of Base Pairs, Base Triples and Base Quadruples.

- "Database of non-canonical base pairs found in known RNA structures" [PDF format. Nucleic Acid Research, 2000 Jan 1; 28(1):375-376].




RNA World

Informatics

Phylogeny

Database


NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 1596


Authors:Ban N, Nissen P, Hansen J, Moore PB, Steitz TA
Citation:The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 289:905-20 August 11, 2000  [PDB link]
Base Pair Type:AAGC N1-amino,amino-N7; N3-amino;Watson-Crick
Base Pair Category:Quadruple Base Interactions; Quadruples
Sequence Context:5' A A(895) C 3'
5'
A A(767) U 3'
5'
U G(2110) G 3'
5'
C C(2477) U 3'
Structure:Atomic structure of the large subunit
Pucker Info:All C3' endo
Melting Point:*
Free Energy:*
Chemical Shift:*
Glycosidic Conf:All anti
Extra Info:Tertiary interaction connecting 5' and 3' halves of 23S rRNA
Figure:AAGC N1-amino,amino-N7; N3-amino;Watson-Crick


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