Non-canonical Base Pair Database | Individual Record Page 1636

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Department of Biology and Biochemistry | University of Houston

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NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 1636

Authors: Hainzl T, Huang S, Sauer-Eriksson AE

Citation: Structure of the SRP19 RNA complex and implications for signal recognition particle assembly Nature 417(6890):767-71 June 13, 2002  [PDB link]

Base Pair Type: AC reverse Hoogsteen

Base Pair Category: Normal Purine-Pyrimidine Base Pairs; Trans Watson-Crick/Hoogsteen

Sequence Context: 5'  3'
C-A,carbonyl-amino
A-C
G-G,carbonyl-amino
3'  5'

Structure: SRP19

Pucker Info: All C3' endo

Melting Point: *

Free Energy: *

Chemical Shift: *

Glycosidic Conf: All anti

Extra Info: A203.C218 form a mismatch

Figure: AC reverse Hoogsteen