Non-canonical Base Pair Database | Individual Record Page 1640

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Department of Biology and Biochemistry | University of Houston

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NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 1640

Authors: Kerwood DJ, Cavaluzzi MJ, Borer PN

Citation: Structure of SL4 RNA from the HIV-1 packaging signal Biochemistry 40(48):14518-29 December 04, 2001  [PDB link]

Base Pair Type: GU wobble

Base Pair Category: Normal Purine-Pyrimidine Base Pairs; Cis Watson-Crick/Watson-Crick

Sequence Context: 5'  3'
G-C,Watson-Crick
G-U
U-G,Wobble
3'  5'

Structure: SL4 RNA

Pucker Info: All C3' endo

Melting Point: *

Free Energy: *

Chemical Shift: *

Glycosidic Conf: All anti

Extra Info: G3.U14 form a mismatch

Figure: GU wobble