Non-canonical Base Pair Database | Individual Record Page 1722

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Department of Biology and Biochemistry | University of Houston

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- "Database of non-canonical base pairs found in known RNA structures" [PDF format. Nucleic Acid Research, 2000 Jan 1; 28(1):375-376].

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NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 1722

Authors: Harms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath A

Citation: High resolution structure of the large ribosomal subunit from a mesophilic eubacterium Cell 107(5):679-88 November 30, 2001  [PDB link]

Base Pair Type: AC wobble

Base Pair Category: Normal Purine-Pyrimidine Base Pairs; Cis Watson-Crick/Watson-Crick

Sequence Context: 5'  3'
G U,*
A-C
U-A,4-carbonyl-amino (1 bond)
3'  5'

Structure: Dienococcus Radiodurans 23S RNA

Pucker Info: All C3' endo

Melting Point: *

Free Energy: *

Chemical Shift: *

Glycosidic Conf: All anti

Extra Info: A292.C369 form a mismatch

Figure: AC wobble