Non-canonical Base Pair Database | Individual Record Page 1841

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NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 1841

Authors: Deng J, Xiong Y, Pan B, Sundaralingam M

Citation: Structure of an RNA dodecamer containing a fragment from SRP domain IV of Escherichia coli Acta Crystallogr D Biol Crystallogr 59(Pt 6):1004-11 June 01, 2003  [PDB link]

Base Pair Type: AC reverse Hoogsteen

Base Pair Category: Normal Purine-Pyrimidine Base Pairs; Trans Watson-Crick/Hoogsteen

Sequence Context: 5'  3'
C-A,carbonyl-amino(1bond)
A-C
G-G,carbonyl-amino(1 bond)
3'  5'

Structure: dodecamer

Pucker Info: All C3' endo

Melting Point: *

Free Energy: *

Chemical Shift: *

Glycosidic Conf: All anti

Extra Info: A6.C19 form a mismatch

Figure: AC reverse Hoogsteen