Non-canonical Base Pair Database | Individual Record Page 1955

Fox Lab

Department of Biology and Biochemistry | University of Houston

- Non-interactive : all records sorted by base pair type | authors' names.

- Summary table [Single page | Multiple pages].

- Structures of Base Pairs, Base Triples and Base Quadruples.

- "Database of non-canonical base pairs found in known RNA structures" [PDF format. Nucleic Acid Research, 2000 Jan 1; 28(1):375-376].

RNA World

Informatics

Phylogeny

Database

NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 1955

Authors: Theimer CA, Blois CA, Feigon J

Citation: Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function Mol. Cell. 17:671-182   [PDB link]

Base Pair Type: GA imino

Base Pair Category: Normal Purine-Purine and Pyrimidine-Pyrimidine Base Pairs; Cis Watson-Crick/Watson-Crick

Sequence Context: 5'  3'
A-U, Watson-Crick
G-A
U U,*
3'  5'

Structure: apoB-mRNA stem-loop

Pucker Info: All C3' endo

Melting Point: *

Free Energy: *

Chemical Shift: *

Glycosidic Conf: All anti

Extra Info: G24.A7 form a mismatch

Figure: GA imino