Non-canonical Base Pair Database | Individual Record Page 1967

Fox Lab

Department of Biology and Biochemistry | University of Houston

- Non-interactive : all records sorted by base pair type | authors' names.

- Summary table [Single page | Multiple pages].

- Structures of Base Pairs, Base Triples and Base Quadruples.

- "Database of non-canonical base pairs found in known RNA structures" [PDF format. Nucleic Acid Research, 2000 Jan 1; 28(1):375-376].

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NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 1967

Authors: Baba S, Kajikawa M, Okada N, Kawai G

Citation: Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2 RNA 10:1380-1387   [PDB link]

Base Pair Type: GA sheared

Base Pair Category: Normal Purine-Purine and Pyrimidine-Pyrimidine Base Pairs; Trans Hoogsteen/Shallow groove

Sequence Context: 5'  3'
U-A,Watson-Crick
G-A
A A,*
3'  5'

Structure: RNA stem-loop of 3' of eel LINE element

Pucker Info: All C3' endo

Melting Point: *

Free Energy: *

Chemical Shift: *

Glycosidic Conf: All anti

Extra Info: G7.A11 form a mismatch in a GGAUA pentaloop

Figure: GA sheared