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Department of Biology and BiochemistryUniversity of Houston  


- Non-interactive : all records sorted by base pair type | authors' names.

- Interactive : search the database.

- Summary table [Single page | Multiple pages].

- Structures of Base Pairs, Base Triples and Base Quadruples.

- "Database of non-canonical base pairs found in known RNA structures" [PDF format. Nucleic Acid Research, 2000 Jan 1; 28(1):375-376].




RNA World

Informatics

Phylogeny

Database


NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 335


Authors:Addess KJ, Basilion JP, Klausner RD, Rouault TA, Pardi A
Citation:Structure and dynamics of the iron responsive element RNA: implications for binding of the RNA by iron regulatory binding proteins J Mol Biol 274(1):72-83 December 21, 1997  [PDB link]
Base Pair Type:GU wobble
Base Pair Category:Normal Purine-Pyrimidine Base Pairs; Cis Watson-Crick/Watson-Crick
Sequence Context:5'  3'
G-C,Watson-Crick
G-U
A-U,Watson-Crick
3'  5'
Structure:IRE RNA
Pucker Info:C3'-endo
Melting Point:*
Free Energy:*
Chemical Shift:*
Glycosidic Conf:*
Extra Info:*
Figure:GU wobble


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