Non-canonical Base Pair Database | Individual Record Page 62

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Department of Biology and Biochemistry | University of Houston

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- "Database of non-canonical base pairs found in known RNA structures" [PDF format. Nucleic Acid Research, 2000 Jan 1; 28(1):375-376].

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NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 62

Authors: Hoogstraten C, Legault P, Pardi A

Citation: NMR solution structure of the lead-dependent ribozyme: evidence for dynamics in RNA catalysis. Journal of Molecular Biology 284(2):337-50 November 27, 1998  [PDB link]

Base Pair Type: AC wobble

Base Pair Category: Normal Purine-Pyrimidine Base Pairs; Cis Watson-Crick/Watson-Crick

Sequence Context: 5'  3'
G G,*
A-C
G-C,Watson-Crick
3'  5'

Structure: Leadzyme RNA

Pucker Info: C3'-endo

Melting Point: *

Free Energy: *

Chemical Shift: *

Glycosidic Conf: Anti

Extra Info: A25 in pair pKa = 6.5

Figure: AC wobble