Non-canonical Base Pair Database | Individual Record Page 889

Fox Lab

Department of Biology and Biochemistry | University of Houston

- Non-interactive : all records sorted by base pair type | authors' names.

- Summary table [Single page | Multiple pages].

- Structures of Base Pairs, Base Triples and Base Quadruples.

- "Database of non-canonical base pairs found in known RNA structures" [PDF format. Nucleic Acid Research, 2000 Jan 1; 28(1):375-376].

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NON-CANONICAL BASE PAIR DATABASE : Individual Record Page 889

Authors: Ennifar E, Nikulin A, Tishchenko S, Serganov A, Nevskaya N, Garber M, Ehresmann B, Ehresmann C, Nikonov S, Dumas P

Citation: The crystal structure of UUCG tetraloop J Mol Biol 304(1):35-42 November 17, 2000  [PDB link]

Base Pair Type: AU reverse Hoogsteen

Base Pair Category: Normal Purine-Pyrimidine Base Pairs; Trans Hoogsteen/Shallow groove

Sequence Context: 5'  3'
G A,*
A-U
C-C,*
3'  5'

Structure: 57nt 16S ribosomal RNA

Pucker Info: A753-C2' endo,U652-C3' endo

Melting Point: *

Free Energy: *

Chemical Shift: *

Glycosidic Conf: all anti

Extra Info: *

Figure: AU reverse Hoogsteen